CS202210140_139
ULIT_138 (CS202210140_139)
Hierarchy: CS202210140_476 > CS202210140_139
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_139
Labelset: Cluster (Rank: 1)
Parent Cell Set: Upper-layer intratelencephalic (CS202210140_476)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L4 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:0533b137f6 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 138 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB NAMPT NUCB SCG UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L4 IT |
| Top three regions | Cerebral cortex: 96.4%, Basal forebrain: 1.2%, Hippocampus: 1.2% |
| Top three dissections | Human MTG: 14.3%, Human V2: 5.2%, Human A19: 4.5% |
| Top Enriched Genes | AL450352.1, AC073578.2, AC112770.1, AC016687.2, LINC01721, AP003066.1, SCHLAP1, COBLL1, AL355672.1, VIPR2 |
| Number of cells | 58263.0 |
| DoubletFinder score | 0.019386493 |
| Total UMI | 18562.62134 |
| Fraction unspliced | 0.670376718 |
| Fraction mitochondrial | 0.007443316 |
| H19.30.002 | 16367.0 |
| H19.30.001 | 18645.0 |
| H18.30.002 | 22075.0 |
| H18.30.001 | 1176.0 |
| Fraction cells from top donor | 0.378885399 |
| Number of donors | 4.0 |
| subcluster_id | None |