CS202210140_131
ULIT_130 (CS202210140_131)
Hierarchy: CS202210140_476 > CS202210140_131
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_131
Labelset: Cluster (Rank: 1)
Parent Cell Set: Upper-layer intratelencephalic (CS202210140_476)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L2/3 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:58570ade17 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 130 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | ADCYAP CBLN CCK CHGA CHGB NAMPT NUCB SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L2/3 IT |
| Top three regions | Cerebral cortex: 97.8%, Amygdala: 0.7%, Basal forebrain: 0.7% |
| Top three dissections | Human A29-A30: 18.1%, Human MTG: 12.0%, Human A23: 7.7% |
| Top Enriched Genes | AC008568.1, AC025839.1, LINC02296, AJ009632.2, SLC38A11, AL117329.1, ENPEP, MIR3976HG, AC016598.2, MFGE8 |
| Number of cells | 25496.0 |
| DoubletFinder score | 0.039900687 |
| Total UMI | 27164.86245 |
| Fraction unspliced | 0.687465533 |
| Fraction mitochondrial | 0.00876547 |
| H19.30.002 | 7574.0 |
| H19.30.001 | 7572.0 |
| H18.30.002 | 9260.0 |
| H18.30.001 | 1090.0 |
| Fraction cells from top donor | 0.363194227 |
| Number of donors | 4.0 |
| subcluster_id | None |