CS202210140_127
ULIT_126 (CS202210140_127)
Hierarchy: CS202210140_476 > CS202210140_127
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_127
Labelset: Cluster (Rank: 1)
Parent Cell Set: Upper-layer intratelencephalic (CS202210140_476)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L2/3 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:58570ade17 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 126 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | ADCYAP CBLN CCK CHGA CHGB GRP NAMPT NUCB SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L2/3 IT |
| Top three regions | Cerebral cortex: 90.8%, Basal forebrain: 3.3%, Hypothalamus: 2.9% |
| Top three dissections | Human FI: 8.2%, Human ACC: 7.9%, Human A25: 7.1% |
| Top Enriched Genes | LINC01090, ADAMTS9-AS1, AC117453.1, AJ009632.2, ADGRF5, AC110014.1, LINC00390, LINC02301, AC060765.1, LINC01478 |
| Number of cells | 36970.0 |
| DoubletFinder score | 0.048449491 |
| Total UMI | 41240.34704 |
| Fraction unspliced | 0.752997423 |
| Fraction mitochondrial | 0.003253079 |
| H19.30.002 | 10787.0 |
| H19.30.001 | 9117.0 |
| H18.30.002 | 16304.0 |
| H18.30.001 | 762.0 |
| Fraction cells from top donor | 0.441006221 |
| Number of donors | 4.0 |
| subcluster_id | None |