CS202210140_126
ULIT_125 (CS202210140_126)
Hierarchy: CS202210140_476 > CS202210140_126
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_126
Labelset: Cluster (Rank: 1)
Parent Cell Set: Upper-layer intratelencephalic (CS202210140_476)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L2/3 IT | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:58570ade17 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 125 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 VGLUT2 |
| Neuropeptide auto_annotation | ADCYAP CART CBLN CCK CHGA CHGB NAMPT NUCB SCG UBL UCN VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L2/3 IT |
| Top three regions | Cerebral cortex: 98.3%, Basal forebrain: 0.9%, Amygdala: 0.4% |
| Top three dissections | Human MTG: 12.0%, Human V2: 10.3%, Human A5-A7: 9.0% |
| Top Enriched Genes | LINC02306, AC110614.1, LINC00507, LINC00326, AC097512.1, LINC00508, AC092440.1, AL132633.1, CYP1B1, AC093607.1 |
| Number of cells | 13397.0 |
| DoubletFinder score | 0.058026878 |
| Total UMI | 26952.32657 |
| Fraction unspliced | 0.707182983 |
| Fraction mitochondrial | 0.004876277 |
| H19.30.002 | 4014.0 |
| H19.30.001 | 3841.0 |
| H18.30.002 | 5305.0 |
| H18.30.001 | 237.0 |
| Fraction cells from top donor | 0.395984176 |
| Number of donors | 4.0 |
| subcluster_id | None |