CS202210140_104
DLCT6b_103 (CS202210140_104)
Hierarchy: CS202210140_474 > CS202210140_104
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_104
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer corticothalamic and 6b (CS202210140_474)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L6b | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:7b6e7cc097 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 103 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | ADCYAP CBLN CCK CHGA CHGB NAMPT NUCB NXPH PDYN SCG UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L6b |
| Top three regions | Cerebral cortex: 62.0%, Hippocampus: 25.8%, Amygdala: 12.1% |
| Top three dissections | Human MEC: 45.4%, Human LEC: 14.7%, Human CA1U-CA2U-CA3U: 11.3% |
| Top Enriched Genes | CCN2, AC092131.1, VWA2, GUCA1C, SLC15A5, ITPRID1, C12orf42, F2R, LINC01735, LINC02218 |
| Number of cells | 1268.0 |
| DoubletFinder score | 0.028890413 |
| Total UMI | 41470.72161 |
| Fraction unspliced | 0.75642845 |
| Fraction mitochondrial | 0.003289468 |
| H19.30.002 | 313.0 |
| H19.30.001 | 427.0 |
| H18.30.002 | 521.0 |
| H18.30.001 | 7.0 |
| Fraction cells from top donor | 0.410883281 |
| Number of donors | 4.0 |
| subcluster_id | None |