CS202210140_103
DLCT6b_102 (CS202210140_103)
Hierarchy: CS202210140_474 > CS202210140_103
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_103
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer corticothalamic and 6b (CS202210140_474)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L6b | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:7b6e7cc097 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 102 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | CBLN CCK CHGA CHGB EDN IGF NAMPT NUCB NXPH SCG UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L6b |
| Top three regions | Amygdala: 66.6%, Cerebral cortex: 28.9%, Hippocampus: 4.2% |
| Top three dissections | Human La: 18.0%, Human BL: 17.0%, Human LEC: 16.4% |
| Top Enriched Genes | AC092131.1, LINC01194, CCN2, VWA2, AC064875.1, SLC15A5, HCP5, SNHG31, AC023669.2, AP003100.2 |
| Number of cells | 1920.0 |
| DoubletFinder score | 0.03478286 |
| Total UMI | 43869.85521 |
| Fraction unspliced | 0.780995161 |
| Fraction mitochondrial | 0.003597052 |
| H19.30.002 | 365.0 |
| H19.30.001 | 939.0 |
| H18.30.002 | 608.0 |
| H18.30.001 | 8.0 |
| Fraction cells from top donor | 0.4890625 |
| Number of donors | 4.0 |
| subcluster_id | None |