CS202210140_102
DLCT6b_101 (CS202210140_102)
Hierarchy: CS202210140_474 > CS202210140_102
PURL: https://purl.brain-bican.org/taxonomy/CS202210140/CS202210140_neurons/CS202210140_102
Labelset: Cluster (Rank: 1)
Parent Cell Set: Deep-layer corticothalamic and 6b (CS202210140_474)
Cell Ontology Term:
Transferred annotations:
| Transferred cell label | Source taxonomy | Source node accession | Algorithm name | Comment |
|---|---|---|---|---|
| L6b | https://purl.brain-bican.org/taxonomy/AIT_MTG/AIT_MTG.json | CrossArea_subclass:7b6e7cc097 | We performed PCA (50 components) on our full dataset, trained a random forest classifier (scikit-learn, class_ weight=‘balanced’, max_depth=50) on the MTG labels, and then predicted labels for all cells. We labeled each cluster with the mode of its constituent cells if two conditions were met: more than 0.8 of predicted labels matched the mode, and the mean probability of these pre- dictions was greater than 0.8. |
Author annotation fields:
| Author annotation | Value |
|---|---|
| Cluster ID | 101 |
| Class auto_annotation | NEUR |
| Neurotransmitter auto_annotation | VGLUT1 |
| Neuropeptide auto_annotation | ADCYAP CBLN CCK CHGA CHGB IGF NAMPT NUCB NXPH PTHLH SCG UBL VGF proSAAS |
| Subtype auto_annotation | None |
| Transferred MTG Label | L6b |
| Top three regions | Cerebral cortex: 65.6%, Hippocampus: 29.5%, Amygdala: 4.8% |
| Top three dissections | Human MEC: 48.6%, Human Sub: 17.6%, Human LEC: 16.3% |
| Top Enriched Genes | AC092131.1, CCN2, AL596257.1, AC064875.1, KRT17, AC005482.1, SNHG31, AP003100.2, OLFML2B, AC022133.2 |
| Number of cells | 2972.0 |
| DoubletFinder score | 0.021066037 |
| Total UMI | 43522.03096 |
| Fraction unspliced | 0.765220964 |
| Fraction mitochondrial | 0.002604994 |
| H19.30.002 | 788.0 |
| H19.30.001 | 1012.0 |
| H18.30.002 | 1156.0 |
| H18.30.001 | 16.0 |
| Fraction cells from top donor | 0.388963661 |
| Number of donors | 4.0 |
| subcluster_id | None |