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Class: ParcellationAtlas

A parcellation atlas is a versioned release reference used to guide experiments or deal with the spatial relationship between objects or the location of objects within the context of some anatomical structure. An atlas is minimally defined by a notion of space (either implicit or explicit) and an annotation set. Reference atlases usually have additional parts that make them more useful in certain situations, such as a well defined coordinate system, delineations indicating the boundaries of various regions or cell populations, landmarks, and labels and names to make it easier to communicate about well known and useful locations (ref: ILX:0777109, RRID:SCR_023499).

URI: ANSRS:ParcellationAtlas

classDiagram class ParcellationAtlas VersionedNamedThing <|-- ParcellationAtlas ParcellationAtlas : description ParcellationAtlas : has_anatomical_annotation_set ParcellationAtlas --> AnatomicalAnnotationSet : has_anatomical_annotation_set ParcellationAtlas : has_anatomical_space ParcellationAtlas --> AnatomicalSpace : has_anatomical_space ParcellationAtlas : has_parcellation_terminology ParcellationAtlas --> ParcellationTerminology : has_parcellation_terminology ParcellationAtlas : id ParcellationAtlas : name ParcellationAtlas : revision_of ParcellationAtlas --> ParcellationAtlas : revision_of ParcellationAtlas : specialization_of ParcellationAtlas --> ParcellationAtlas : specialization_of ParcellationAtlas : version

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_anatomical_space 1..1
AnatomicalSpace		 Reference to the anatomical space component of the parcellation atlas direct
has_anatomical_annotation_set 1..1
AnatomicalAnnotationSet		 Reference to the anatomical annotation set component of the parcellation atla... direct
has_parcellation_terminology 1..1
ParcellationTerminology		 Reference to the parcellation terminology component of the parcellation atlas direct
specialization_of 0..1
ParcellationAtlas		 Reference to the general (non versioned) parcellation atlas for which the par... direct
version 1..1
String		 VersionedNamedThing
revision_of 0..1
ParcellationAtlas		 VersionedNamedThing
id 1..1
Uriorcurie		 NamedThing
name 1..1
String		 NamedThing
description 1..1
String		 NamedThing

Usages

used by used in type used
ParcellationAtlas specialization_of range ParcellationAtlas
ParcellationAtlas revision_of range ParcellationAtlas

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/my-org/ansrs-schema

Mappings

Mapping Type Mapped Value
self ANSRS:ParcellationAtlas
native ANSRS:ParcellationAtlas

LinkML Source

Direct

name: ParcellationAtlas
description: 'A parcellation atlas is a versioned release reference used to guide
  experiments or deal with the spatial relationship between  objects or the location
  of objects within the context of some anatomical structure. An atlas is minimally
  defined by a notion  of space (either implicit or explicit) and an annotation set.
  Reference atlases usually have additional parts that make them  more useful in certain
  situations, such as a well defined coordinate system, delineations indicating the
  boundaries of various  regions or cell populations, landmarks, and labels and names
  to make it easier to communicate about well known and useful  locations (ref: ILX:0777109,
  RRID:SCR_023499).'
from_schema: https://w3id.org/my-org/ansrs-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    range: ParcellationAtlas
attributes:
  has_anatomical_space:
    name: has_anatomical_space
    description: Reference to the anatomical space component of the parcellation atlas
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    range: AnatomicalSpace
    required: true
  has_anatomical_annotation_set:
    name: has_anatomical_annotation_set
    description: Reference to the anatomical annotation set component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    range: AnatomicalAnnotationSet
    required: true
  has_parcellation_terminology:
    name: has_parcellation_terminology
    description: Reference to the parcellation terminology component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    range: ParcellationTerminology
    required: true
  specialization_of:
    name: specialization_of
    description: Reference to the general (non versioned) parcellation atlas for which
      the parcellation atlas is a specific  version release of.
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    range: ParcellationAtlas

Induced

name: ParcellationAtlas
description: 'A parcellation atlas is a versioned release reference used to guide
  experiments or deal with the spatial relationship between  objects or the location
  of objects within the context of some anatomical structure. An atlas is minimally
  defined by a notion  of space (either implicit or explicit) and an annotation set.
  Reference atlases usually have additional parts that make them  more useful in certain
  situations, such as a well defined coordinate system, delineations indicating the
  boundaries of various  regions or cell populations, landmarks, and labels and names
  to make it easier to communicate about well known and useful  locations (ref: ILX:0777109,
  RRID:SCR_023499).'
from_schema: https://w3id.org/my-org/ansrs-schema
is_a: VersionedNamedThing
slot_usage:
  revision_of:
    name: revision_of
    domain_of:
    - VersionedNamedThing
    range: ParcellationAtlas
attributes:
  has_anatomical_space:
    name: has_anatomical_space
    description: Reference to the anatomical space component of the parcellation atlas
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: has_anatomical_space
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: AnatomicalSpace
    required: true
  has_anatomical_annotation_set:
    name: has_anatomical_annotation_set
    description: Reference to the anatomical annotation set component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: has_anatomical_annotation_set
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: AnatomicalAnnotationSet
    required: true
  has_parcellation_terminology:
    name: has_parcellation_terminology
    description: Reference to the parcellation terminology component of the parcellation
      atlas
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: has_parcellation_terminology
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: ParcellationTerminology
    required: true
  specialization_of:
    name: specialization_of
    description: Reference to the general (non versioned) parcellation atlas for which
      the parcellation atlas is a specific  version release of.
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: specialization_of
    owner: ParcellationAtlas
    domain_of:
    - ParcellationAtlas
    range: ParcellationAtlas
  version:
    name: version
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: version
    owner: ParcellationAtlas
    domain_of:
    - VersionedNamedThing
    range: string
    required: true
  revision_of:
    name: revision_of
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: revision_of
    owner: ParcellationAtlas
    domain_of:
    - VersionedNamedThing
    range: ParcellationAtlas
  id:
    name: id
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    identifier: true
    alias: id
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: name
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    range: string
    required: true
  description:
    name: description
    from_schema: https://w3id.org/my-org/ansrs-schema
    rank: 1000
    alias: description
    owner: ParcellationAtlas
    domain_of:
    - NamedThing
    range: string
    required: true